Sleep issues and scared of the loud rain

Sofia woke up at 6.45am. I got her and Mike made eggs on toast for all of us. Sofia has realised she loves the yolk and I had none of my two eggs ha ha. Afterwards Mike left for work and Sofia and I played. She started getting tired a little after 9, but I still took her to music…

She loved it as usual, but wasn’t quite herself at the end. She was definitely over-tired. When we got home I gave her food and drink and put her to bed. She woke up about an hour later as it started raining and within seconds it got really loud and she cried… she sounded really scared… I ran in there and just held her. She calmed down pretty quick luckily. She was trying to get comfortable on me for a sleep (I sat down in the chair), but I didn’t think she’d be happy there to sleep so I tried to put her back into bed when she was almost asleep… That didn’t work… so back up…
Sofia played a bit by herself and I got some long over due housework done. Next we played for a bit and then Mike got home. We had some time together and then I went for a walk with Pablo whilst Mike fed Sofia. When I got back Sofia had a bath and then we put her to bed. She cried and really was acting up. Over-tired maybe?

Sofia woke up crying like she was really scared again at around 7pm. I gave her a big cuddle and afterwards put her back into bed. She only protested a little. I stroke her back and hair, told her to have a nice sleep and left. She never cried, just went back to sleep.

Sofia woke up crying again at 2am, so I went in and gave her a long cuddle. However, this time when I put her down she cried for a minute or so… then she went back to sleep, but it took her awhile. I could hear her tossing and turning. 
Sofia woke up at couple more times, but she didn’t cry… I could hear her moving around and occasionally babbling…